PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.14G043900.1.p
Common NameGLYMA_14G043900, LOC100786206
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 878aa    MW: 98898.7 Da    PI: 7.0103
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.14G043900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR145.52.5e-1456130290
                 FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          fYneY+k+vGFs +   + +s+ +g  + r+f C +e ++++  ++              C+a+++++++ ++kw+vtk+ +eH+H++a
  Glyma.14G043900.1.p  56 FYNEYGKRVGFSCKAGPHGRSTADGANMFREFLCGREDSKRKPPES--------------CNAMIRIEQNGQNKWVVTKFIKEHSHSMA 130
                          ***********************************99988887777..............**************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.9E-1156130IPR004330FAR1 DNA binding domain
PfamPF105514.0E-28272364IPR018289MULE transposase domain
PfamPF044346.5E-11550584IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096611.226550586IPR007527Zinc finger, SWIM-type
SMARTSM005755.8E-8561588IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 878 aa     Download sequence    Send to blast
MGEGSDHQAM ADNGNAESGE GGVRSAENNS GSHVRVGVSE PYVGREFDSQ DAAKTFYNEY  60
GKRVGFSCKA GPHGRSTADG ANMFREFLCG REDSKRKPPE SCNAMIRIEQ NGQNKWVVTK  120
FIKEHSHSMA SVSKVHNIRP RKPFSSVGRT MPETYQGVGL VPSGMMYVSM DKNCIPTKNI  180
QGIKNTPAAV AVAETYQPVK SPTMMNYAVR PATRKRTLGK DAHNLLEYFK KMQAENPGFF  240
YAIQLDEDNH MSNVFWADAR SRTAYSHFGD AVTLDTTYRI TQYGVPFAPF TGVNHHGQMI  300
LFGCALLLDD SEASFVWLFK TFLTAMNEHY PVSITTDQDR AIQTAVSQVF PQTRHCISKW  360
HVLREGHEKV AHVCNMHPNF QIELYNCINL TETIEEFDSS WNFIINKYEL TKNDWLQSLY  420
SARAQWVPAY FRDSFFAAIS PNQGFDGSIF YGFVNHQTTL PLFFRQYEQA LECWFEKELE  480
SDYDTICTTP VLKTPSPMEK QAANLYTRKI FSKFQEELVE TFAYTANRIE EDGENSIFRV  540
AKFEDDQKVY IVTLNLSELR ANCSCQMFEY SGILCRHVLT VFTVTNVLTL PSHYILKRWT  600
RNSKSSAGSV ELADESHGPK SLTSRYSNLC WEAIKYAEEG ALTVETYDTA ISALRESGKK  660
ISFMRRSVAK VAPPSHPVSG TAYDDRKSPT SAADTNPLLW PLQDETTQRF NLNDDSTPVQ  720
SVADLNLPQM TPVSLQRDDG PPEMVVYPCL KSLTWVMENK NSTPGNRVAV ISLKLQDYSR  780
IPSTESEVRF NLSKVTLEPL FNHMVNISDQ LSIPTRKFAV LNLKLPVAET TSGASEVKFQ  840
VSKDTLGAVL RSMAYIREQL LGPGDVQTEP MSKRPRK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352270.0AC235227.1 Glycine max strain Williams 82 clone GM_WBb0025G03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006595809.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
SwissprotQ9ZVC90.0FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLI1M7C50.0I1M7C5_SOYBN; Uncharacterized protein
STRINGGLYMA14G04820.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.20.0FAR1-related sequence 3